Hello, we apologize for the issue you are facing. To verify your website with Yandex using Rank Math, you need to add the Yandex Verification ID in the Rank Math settings. Here are the steps you should follow:
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Open Webmaster Tools: Navigate to Rank Math SEO → General Settings → Webmaster Tools inside your WordPress dashboard.

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Add Yandex Verification ID: Under the Webmaster Tools, find the Yandex Verification ID field. If this option is unavailable, ensure you’re using the Advanced Mode in Rank Math. Paste the code that you’ve copied earlier in the Yandex Verification ID field.

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Save Changes: Once you’ve added the Verification ID, click on Save Changes.

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Verify On Yandex: Now Rank Math would have added the Yandex meta tag to your website. You can head over to Yandex Webmaster Tools and click the Check button to verify if the meta tag has been added.

If you have already added the verification code in the header, it should work as well, but using Rank Math is a more straightforward method. If you encounter any issues, please clear your cache and try again. If you still have questions, feel free to reply to this ticket, and a human agent from our support team will assist you further.
Sources:
Verifying Your Domain with Yandex » Rank Math
Hello,
Thank you for contacting us and bringing your concern to our attention.
You can use any method to add the verification code to your website. If you’ve already added the code on your website header by using some other method, you don’t need to add this again in Rank Math.
Hope that helps and please don’t hesitate to let us know if you have any other questions.
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Thank you.
Hello,
Since we did not hear back from you for 15 days, we are assuming that you found the solution. We are closing this support ticket.
If you still need assistance or any other help, please feel free to open a new support ticket, and we will be more than happy to assist.
Thank you.